Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015910045.1_cds_XP_016460150.1_53598
CDS Infomation

[gene=LOC107783659] [db_xref=GeneID:107783659] [protein=rRNA biogenesis protein RRP5-like] [protein_id=XP_016460150.1] [location=complement(join(23226..23333,23462..23545,23650..23880,23967..24122,24235..24331,24941..25117,25221..25606,25998..26096,26455..26638,26715..26860,28511..28522))] [gbkey=CDS]
Sequence

ATGGCGGTGCAGGCATATGTGAAAAATGTTACACCGAAAGGATGTTTCGTAATGCTTTCG
CGCAAAGTTGATGCAAAAGTTCTTCTCTCAAACTTGTATGATGGCTATGTTGAAAACCCG
GAGAAAGAATTCCCTGTTGGGAAACTTGTCGTTGGCAAGGTGGTGTCAGTGGAGCCATTG
TCTAAGCGAGTTGAAGTCACTCTAAGGACATCAAGTGCAGGCAGTGCTTCCAAGTCTGAT
AAAGATGCTCTAAGTAATTTGACTGTTGGGGATGTCATAACTGGCAGAGTTAAGCGAGTT
GAACCGTATGGCTTGTTTATCCTAGTTGATCACACAAACATGGTTGGATTGTGCCATGTT
TCAGAGATCTCTGACGATCATGTCAACAATATTGACTCTAGATACAAAGCTGGAGATAGA
GTGACGGCAAAGATTTTGAAGGTGGATAAGGAAAGACAGAGAATATCACTTGGGATGAAG
AATTCATATTTTAATGATGCTACAAGTGGTGAAACAAATATAAGGCACAGTTCTGGTTGT
GCAATGGAAGGAAATGCTCTTTCCAGAGGTATCGAGTCAACTCCTTCACCTGAGAGGAGC
TCCCAAGAACGGGATAATCTTGACGAAGAATCTGTAGATGGGATGGACCCGTTCCTTGCT
GAAGTTGAATCTCGGGCATCAATACCACCATTGGAGGTCCCACTTGATGATATAGAAAAA
TTGGATGTGGGCGATGTAGTTAATCAAGACTCAGGTGATGCTAGCAATTTAGGTACTTCA
GATGAAAAGAACAAGAAACTAGCAGCAAAGAAAGCTAAAAGATTGAGGGAACAAGAAATT
AGAGCTGCTGAGGAAAGATTACTAGAAAAAGATATTCCCAGAGATGAAGATGAGTTTGAG
AAATTAGTTAGAAGTTCCCCAAATAGCAGCTTTGTCTGGATAAAATACATGGCATTTGTG
CTGTCTTTGGCTGATGTTGAGAAGGCACGCTCAATTGCTGAACGGGCTTTGAGGACAATA
AATGTTCGAGAAGAGTCGGAGAAGCTGAATGTTTGGGTTGCCTACTTTAATTTAGAAAAT
GAGTATGGAAATCCCTCACAGGAAGCTGTTGCAAAAGTATTCCAAAGAGCATTGCAGTAT
TGTGATCCCAAAAAGGTGCATCTGGCCTTGTTAGGAATGTATGAGAGGACCGAGCAACAC
ACACTCTCAGATGAACTGCTTAACAAGATGGTTAAGAAGTTCAAGCATTCGTGCACGGTT
TGGCTCAGGCGGGTTCAGTGGCTATTGAAACAAAGCCAAGATGGGGTCCAGTCAGTGGTG
AATCGTGCTTTACTAAGTCTTCCTCCGCACAAGCATATTAAGTTTATTTCACAGACAGCT
ATTCTAGAGTTCAAGTGTGGGGTTCCTGACAGGGGTCGCTCCTTGTTTGAGAAAATGCTT
CGCGAGTATCCCAAGAGAACTGACTTGTGGAGTGTTTATCTTGATCAAGAGATTCGACTA
GGAGATGCGGAAGTGATCCGTGCTTTATTTGAAAGGGCAATTACTCTTAACCTTCCACCC
AAAAAGATGAAGTTCCTTTTTAAGAAGTATCTCGAGTATGAGAAGACGCTTGGTGATGAC
GATCGAATGGAGGCTGTGAAAAGAAAAGCAATGGAATATGTTGAGAGCACTCTTGCTTAA

Peptide Sequence

PEP ID

XP_016460150.1
PEP Infomation

PREDICTED: rRNA biogenesis protein RRP5-like [Nicotiana tabacum]
Sequence

MAVQAYVKNVTPKGCFVMLSRKVDAKVLLSNLYDGYVENPEKEFPVGKLVVGKVVSVEPL
SKRVEVTLRTSSAGSASKSDKDALSNLTVGDVITGRVKRVEPYGLFILVDHTNMVGLCHV
SEISDDHVNNIDSRYKAGDRVTAKILKVDKERQRISLGMKNSYFNDATSGETNIRHSSGC
AMEGNALSRGIESTPSPERSSQERDNLDEESVDGMDPFLAEVESRASIPPLEVPLDDIEK
LDVGDVVNQDSGDASNLGTSDEKNKKLAAKKAKRLREQEIRAAEERLLEKDIPRDEDEFE
KLVRSSPNSSFVWIKYMAFVLSLADVEKARSIAERALRTINVREESEKLNVWVAYFNLEN
EYGNPSQEAVAKVFQRALQYCDPKKVHLALLGMYERTEQHTLSDELLNKMVKKFKHSCTV
WLRRVQWLLKQSQDGVQSVVNRALLSLPPHKHIKFISQTAILEFKCGVPDRGRSLFEKML
REYPKRTDLWSVYLDQEIRLGDAEVIRALFERAITLNLPPKKMKFLFKKYLEYEKTLGDD
DRMEAVKRKAMEYVESTLA

Transcript Sequence

Gene sequence data has not been registered.